PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN25939.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 507aa    MW: 56830.5 Da    PI: 5.6968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN25939.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13313359354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h + E++RR+++N ++  Lr l+P++     +K + a+++  A++YI++L
  KHN25939.1 313 TKHFATEKQRREQLNGKYKILRNLIPSP-----TKIDRASVVGDAIDYIREL 359
                 79**************************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-14308372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.818310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-11313359No hitNo description
PfamPF000102.8E-10313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11313368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MHEQTGCFDP NTMGESIPFL KDNFPQTLPP SPIVVGNTTN SNNNSLEQNL RLSVEELSYN  60
HHYPQHQEDH VSTYVSGVTA TSIEIPHPQH LGLNMGNSYI NNNNNMDNHL VQEVIDAYPY  120
QLSTWDPATV QELQDIAYAN HTEQQQQQQQ NEQQFQQIET QNCSQSYNNP SSILDPPYPS  180
PDLLNLLHMP RCSASSLLTN PSICLTNPTQ NTPNFQNPMA FLGDLTIGSE NTSASSVLYD  240
PLFHLNLPPQ PPALRELFQS LPRGYSLPTN SRNGSLFAGG DEMEGDGSQL DMGVLEFNRV  300
TPSVGKGRGG KATKHFATEK QRREQLNGKY KILRNLIPSP TKIDRASVVG DAIDYIRELI  360
RTVNELKLLV EKKRYAKERY KRPKTEDAAE SCNIKPFGDP DGGIRTSWLQ RKSKDSEVDV  420
RIIDDDVTIK LFQRKKINCL LFVSKVLDEL QLELHHVAGG HVGEYCSFLF NSKIMEGSSV  480
YASAIANRVI DVLDSQYTAA VPHTNSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358830.0AC235883.2 Glycine max clone GM_WBc0013D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631531.10.0PREDICTED: transcription factor bHLH89-like
TrEMBLA0A0B2R0Z70.0A0A0B2R0Z7_GLYSO; Transcription factor bHLH89
STRINGGLYMA05G26490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-72bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]